[INFO] fetching crate bio 1.4.0...
[INFO] checking bio-1.4.0 against master#158f00a1c5175648af6f6099b075f78d1d014a28 for pr-121251
[INFO] extracting crate bio 1.4.0 into /workspace/builds/worker-5-tc1/source
[INFO] validating manifest of crates.io crate bio 1.4.0 on toolchain 158f00a1c5175648af6f6099b075f78d1d014a28
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+158f00a1c5175648af6f6099b075f78d1d014a28" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bio 1.4.0
[INFO] finished tweaking crates.io crate bio 1.4.0
[INFO] tweaked toml for crates.io crate bio 1.4.0 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+158f00a1c5175648af6f6099b075f78d1d014a28" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+158f00a1c5175648af6f6099b075f78d1d014a28" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded nalgebra-macros v0.1.0
[INFO] [stderr]   Downloaded strum v0.25.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded num-complex v0.4.5
[INFO] [stderr]   Downloaded rand_distr v0.4.3
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded packed_simd v0.3.9
[INFO] [stderr]   Downloaded ndarray v0.15.6
[INFO] [stderr]   Downloaded proptest v1.4.0
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded itertools v0.11.0
[INFO] [stderr]   Downloaded matrixmultiply v0.3.8
[INFO] [stderr]   Downloaded wide v0.7.15
[INFO] [stderr]   Downloaded safe_arch v0.7.1
[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded ordered-float v3.9.2
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded bytecount v0.6.7
[INFO] [stderr]   Downloaded strum_macros v0.25.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+158f00a1c5175648af6f6099b075f78d1d014a28" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 83b9005f794b59d77f96e10288525e2037d8a89e011dfcc891931b6941f3b0aa
[INFO] running `Command { std: "docker" "start" "-a" "83b9005f794b59d77f96e10288525e2037d8a89e011dfcc891931b6941f3b0aa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "83b9005f794b59d77f96e10288525e2037d8a89e011dfcc891931b6941f3b0aa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "83b9005f794b59d77f96e10288525e2037d8a89e011dfcc891931b6941f3b0aa", kill_on_drop: false }`
[INFO] [stdout] 83b9005f794b59d77f96e10288525e2037d8a89e011dfcc891931b6941f3b0aa
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+158f00a1c5175648af6f6099b075f78d1d014a28" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8ab97456b9d15e876f8536480d85c9318c0ec07c76b69feef6b5efb5e0690f15
[INFO] running `Command { std: "docker" "start" "-a" "8ab97456b9d15e876f8536480d85c9318c0ec07c76b69feef6b5efb5e0690f15", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling num-traits v0.2.18
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]     Checking bytemuck v1.14.3
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling syn v2.0.52
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustix v0.38.31
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking bitflags v2.4.2
[INFO] [stderr]     Checking linux-raw-sys v0.4.13
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking safe_arch v0.7.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking either v1.10.0
[INFO] [stderr]     Checking petgraph v0.6.4
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking wide v0.7.15
[INFO] [stderr]     Checking bytecount v0.6.7
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking unarray v0.1.4
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.5
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking getrandom v0.2.12
[INFO] [stderr]     Checking wait-timeout v0.2.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_xorshift v0.3.0
[INFO] [stderr]     Checking tempfile v3.10.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking rusty-fork v0.3.0
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking proptest v1.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.197
[INFO] [stderr]    Compiling thiserror-impl v1.0.57
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking thiserror v1.0.57
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]     Checking serde v1.0.197
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `XYEmission`
[INFO] [stdout]   --> src/stats/pairhmm/pairhmm.rs:20:63
[INFO] [stdout]    |
[INFO] [stdout] 20 |     EmissionParameters, GapParameters, StartEndGapParameters, XYEmission,
[INFO] [stdout]    |                                                               ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `block_mut`, `left_block_mut`, and `print_state` are never used
[INFO] [stdout]    --> src/pattern_matching/myers/traceback.rs:74:8
[INFO] [stdout]     |
[INFO] [stdout] 65  | pub(super) trait TracebackHandler<'a, T, D>
[INFO] [stdout]     |                  ---------------- methods in this trait
[INFO] [stdout] ...
[INFO] [stdout] 74  |     fn block_mut(&mut self) -> &mut State<T, D>;
[INFO] [stdout]     |        ^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 80  |     fn left_block_mut(&mut self) -> &mut State<T, D>;
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 149 |     fn print_state(&self) {
[INFO] [stdout]     |        ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `block_mut`, `left_block_mut`, and `print_state` are never used
[INFO] [stdout]    --> src/pattern_matching/myers/traceback.rs:74:8
[INFO] [stdout]     |
[INFO] [stdout] 65  | pub(super) trait TracebackHandler<'a, T, D>
[INFO] [stdout]     |                  ---------------- methods in this trait
[INFO] [stdout] ...
[INFO] [stdout] 74  |     fn block_mut(&mut self) -> &mut State<T, D>;
[INFO] [stdout]     |        ^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 80  |     fn left_block_mut(&mut self) -> &mut State<T, D>;
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 149 |     fn print_state(&self) {
[INFO] [stdout]     |        ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 14.72s
[INFO] running `Command { std: "docker" "inspect" "8ab97456b9d15e876f8536480d85c9318c0ec07c76b69feef6b5efb5e0690f15", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8ab97456b9d15e876f8536480d85c9318c0ec07c76b69feef6b5efb5e0690f15", kill_on_drop: false }`
[INFO] [stdout] 8ab97456b9d15e876f8536480d85c9318c0ec07c76b69feef6b5efb5e0690f15
